Carbon Nanotubes as Schottky Barrier Transistors

We show that carbon nanotube transistors operate as unconventional "Schottky barrier transistors", in which transistor action occurs primarily by varying the contact resistance rather than the channel conductance. Transistor characteristics are calculated for both idealized and realistic geometries, and scaling behavior is demonstrated. Our results explain a variety of experimental observations, including the quite different effects of doping and adsorbed gases. The electrode geometry is shown to be crucial for good device performance.Comment: 4 pages, 5 figures, appears in Physical Review Letter

To stay or go: differential dispersal rates in cryptic species of a marine nematode

Behind the morphological similarity of many species, a hidden genetic diversity can be found. This cryptic diversity has been well documented in the marine nematode Rhabditis (Pellioditis) marina, a common bactivore associated with decomposing macro-algae in the littoral zone of coastal and estuarine environments. Four cryptic species of R. marina (Pm I, Pm II, Pm III and Pm IV) co-occur along the south-western coast and estuaries of The Netherlands. This coexistence challenges traditional competition theory, which states that competition will be most severe between closely related species. A previous study showed that competition between the four cryptic species occurred, but interspecific interactions were affected by environmental conditions such as salinity. One of the most important mechanisms to react to competition is dispersal. Most organisms have at least one stage in which dispersal occurs over a specific spatial scale. Meiobenthic species, however, lack any pelagic stage. But, recent research shows more and more evidence that meiofauna is also able to actively disperse with lateral sinusoidal movements in the interstitial spaces as one of the most common modes of dispersal of nematodes over short distances. Dispersal is a process triggered partially by the internal conditions of organisms and partially by environmental conditions. In the current experiment, species-specific differences in active dispersal rates and the effects of salinity and food distribution on dispersal behaviour were tested in four cryptic species of R. marina (Pm I, Pm II, Pm III and Pm IV), The results of the experiment showed that dispersal is a species-specific behaviour with Pm III being the most rapid disperser (first dispersal event occurred after an average of 3 days), and Pm I the slowest disperser (average of 10 days). An effect of food distribution on the dispersal rates of all cryptic species was found with the most rapid dispersal if no food was present at the start situation. Salinity also had an effect with a higher dispersal rate at lower salinity for all the species. Moreover, the number of dispersive organisms differed between the species, with only one female disperser in Pm I and Pm III and a mix of female and male dispersers for Pm II and Pm IV at the first dispersal event. This species-specific dispersal behaviour and the influence of external conditions on dispersal can influence the reaction on competition. In a future experiment the effect of competition on dispersal will be studied by using competition cultures, where all four cryptic species can influence each other, but the organisms have the chance to disperse away. These results are important to better understand the processes behind the coexistence of cryptic species

Differences in time until dispersal between cryptic species of a marine nematode species complex

Co-occurrence of closely related species may be achieved in environments with fluctuating dynamics, where competitively inferior species can avoid competition through dispersal. Here we present an experiment in which we compared active dispersal abilities (time until first dispersal, number and gender of dispersive adults, and nematode densities at time of dispersal) in Litoditis marina, a common bacterivorous nematode species complex comprising four often co-occurring cryptic species, Pm I, II, III, and IV, as a function of salinity and food distribution. The experiment was conducted in microcosms consisting of an inoculation plate, connection tube, and dispersal plate. Results show species-specific dispersal abilities with Pm I dispersing almost one week later than Pm III. The number of dispersive adults at time of first dispersal was species-specific, with one dispersive female in Pm I and Pm III and a higher, gender-balanced, number in Pm II and Pm IV. Food distribution affected dispersal: in absence of food in the inoculation plate, all species dispersed after ca four days. When food was available Pm I dispersed later, and at the same time and densities irrespective of food conditions in the dispersal plate (food vs no food), suggesting density-dependent dispersal. Pm III dispersed faster and at a lower population density. Salinity affected dispersal, with slower dispersal at higher salinity. These results suggest that active dispersal in Litoditis marina is common, density-dependent, and with species, gender- and environment-specific dispersal abilities. These differences can lead to differential responses under suboptimal conditions and may help to explain temporary coexistence at local scales

DNA barcoding of benthic species from the Belgian part of the North Sea for diversity impact assessments

Species living in or near the seafloor fulfill a variety of ecosystem functions. Understanding how benthic communities respond to human activities is crucial to determine how such activities impact the functioning of the benthic environment. In the Belgian part of the North Sea, ILVO is extensively monitoring different benthic ecosystem components, and explores new ways to characterise the structural and functional benthic diversity. DNA-based approaches such as metabarcoding may complement and speed up the characterisation of changes noted in these communities during impact assessments. Linking sequences to taxonomic data is indispensable when information on ecosystem functioning is the key concern. However, the taxonomic resolution of metabarcoding is still hampered by a lack of reliable reference sequence data to which the metabarcode sequences can be compared. We compiled longterm monitoring data from soft sediment macrobenthic, epibenthic and pelagic fish communities in the Belgian part of the North Sea. For macrobenthos, 334 species belonging to nine phyla have been registered in the past 15 years. The classes Polychaeta, Malacostraca and Bivalvia are the most species rich and include 40%, 37% and 13% of all species, respectively. ILVO aims to barcode as many benthic species as possible to validate and - when proven to be reliable - to implement DNA-based methods for biodiversity impact assessments. To this end, ethanol preserved voucher specimens are morphologically identified, photographed and stored as reference material for DNA sequencing. Partial or whole specimens are subjected to DNA extraction and COI Sanger sequencing. At present, the genetic reference database contains 95 macrobenthic species, representing the aforementioned classes and phyla. In addition, 85 epibenthic species and demersal/benthopelagic fish have been barcoded. Collection and sequencing of additional species is an ongoing effort. Next to DNA barcoding, we also explore new library preparation methods for high throughput sequencing of benthic communities by using different COI primer sets and primer free approaches such as long read 18S rRNA sequencing, on mock communities, ethanol fixatives and field samples. These methods will be compared to morphologically identified samples to assess whether comparable patterns in species and functional diversity patterns in impacted versus non-impacted sediments are found by the different approaches

Patronen en processen in de genetische structuur van twee mariene nemarodentaxa <i>Rhabditis (Pellioditis) marina</i> and <i>Halomonhystera disjuncta</i>): een moleculaire, morfologische en experimentele benadering = Patterns and processes in the genetic structure of two marine nematode taxa (<i>Rhabditis (Pellioditis) marina</i> and <i>Halomonhystera disjuncta</i>): a molecular, morphology and experimental approach

In the present study, the population genetic structure of two free-living marine nematode species, Rhabditis (Pellioditis) marina and Halomonhystera disjuncta, was analysed. The principal aims were to explore 1) dispersal capacity, 2) cryptic diversity and 3) intra- and interspecific molecular variation and to investigate 4) to what extent metapopulation dynamics govern genetic structuring in both species

Population genetic structure in <i>Sabatieria</i> (Nematoda) reveals intermediary gene flow and admixture between distant cold seeps from the Mediterranean Sea

BackgroundThere is a general lack of information on the dispersal and genetic structuring for populations of small-sized deep-water taxa, including free-living nematodes which inhabit and dominate the seafloor sediments. This is also true for unique and scattered deep-sea habitats such as cold seeps. Given the limited dispersal capacity of marine nematodes, genetic differentiation between such geographically isolated habitat patches is expected to be high. Against this background, we examined genetic variation in both mitochondrial (COI) and nuclear (18S and 28S ribosomal) DNA markers of 333 individuals of the genus Sabatieria, abundantly present in reduced cold-seep sediments. Samples originated from four Eastern Mediterranean cold seeps, separated by hundreds of kilometers, and one seep in the Southeast Atlantic.ResultsIndividuals from the Mediterranean and Atlantic were divided into two separate but closely-related species clades. Within the Eastern Mediterranean, all specimens belonged to a single species, but with a strong population genetic structure (ΦST = 0.149). The haplotype network of COI contained 19 haplotypes with the most abundant haplotype (52% of the specimens) shared between all four seeps. The number of private haplotypes was high (15), but the number of mutations between haplotypes was low (1–8). These results indicate intermediary gene flow among the Mediterranean Sabatieria populations with no evidence of long-term barriers to gene flow.ConclusionsThe presence of shared haplotypes and multiple admixture events indicate that Sabatieria populations from disjunct cold seeps are not completely isolated, with gene flow most likely facilitated through water current transportation of individuals and/or eggs. Genetic structure and molecular diversity indices are comparable to those of epiphytic shallow-water marine nematodes, while no evidence of sympatric cryptic species was found for the cold-seep Sabatieria

Transthyretin levels in the vitreous correlate with change in visual acuity after vitrectomy

Background/aim: Little is known about biochemical markers related to change in visual acuity after vitrectomy. The potential use of transthyretin (TTR), a carrier of the retinol/retinol-binding protein, as a biochemical marker protein, was investigated. Methods: TTR was measured using immunonephelometry in a group of patients (n = 77) in longstanding (> 1 week) retinal detachment (n = 29), fresh (< 1 week) retinal detachment (n = 17), macular holes (n = 20) or diabetic retinopathy (n = 11). Vitreous samples were taken at the start of every vitrectomy procedure. For reference values, cadaver specimens (n = 73) were used. Results: Reference values for vitreous TTR (median 18 mg/l; IQR 4 to 24 mg/l) comprised 2.2% of reference values for vitreous protein levels (median 538 mg/l; IQR 269 to 987 mg/l). Vitreous TTR values of patients were comparable in all disorders. Vitreous TTR values were higher in phakic (median 22.5 mg/l; IQR 10 to 27 mg/l) than in pseudophakic patients (median 12 mg/l; IQR 8 to 19 mg/l; p = 0.06). Postoperative change in visual acuity correlated well with vitreous TTR values found peroperatively (r(s) = 0.408; p = 0.012). Both change in visual acuity and lens status were the only variables which proved to explain the variance of TTR (multiple correlation coefficient: 0.494; phakic status: t = 2.767; p = 0.0084; and change in visual acuity t = 2.924: p = 0.0056). Conclusion: Vitreous fluid concentrations of TTR can be regarded as a biochemical marker for retinal function

Non-volatile molecular memory elements based on ambipolar nanotube field effect transistors

We have fabricated air-stable n-type, ambipolar carbon nanotube field effect transistors (CNFETs), and used them in nanoscale memory cells. N-type transistors are achieved by annealing of nanotubes in hydrogen gas and contacting them by cobalt electrodes. Scanning gate microscopy reveals that the bulk response of these devices is similar to gold-contacted p-CNFETs, confirming that Schottky barrier formation at the contact interface determines accessibility of electron and hole transport regimes. The transfer characteristics and Coulomb Blockade (CB) spectroscopy in ambipolar devices show strongly enhanced gate coupling, most likely due to reduction of defect density at the silicon/silicon-dioxide interface during hydrogen anneal. The CB data in the ``on''-state indicates that these CNFETs are nearly ballistic conductors at high electrostatic doping. Due to their nanoscale capacitance, CNFETs are extremely sensitive to presence of individual charge around the channel. We demonstrate that this property can be harnessed to construct data storage elements that operate at the few-electron level.Comment: 6 pages text, 3 figures and 1 table of content graphic; available as NanoLetters ASAP article on the we

Colonization patterns of Nematoda on decomposing algae in the estuarine environment: community assembly and genetic structure of the dominant species <i>Pellioditis marina</i>

We performed a field experiment in the Westerschelde Estuary (The Netherlands) to characterize the colonization dynamics of nematodes in relation to the proximity of a source population and to local environmental conditions. The effects of colonization on the population genetic structure of the dominant species, Pellioditis marina, were simultaneously investigated. Two contrasting sites, each containing four patches with defaunated algae, were sampled seven times during 1 month. Site A was situated amidst Fucus stands, which permanently harbor P. marina, while site B was approximately 100 m from any source population and experienced more stressful environmental conditions. We hypothesized that (1) colonization in site A would proceed faster than in site B and that (2) founder events and genetic bottlenecks would affect population genetic structure and differentiation at site B more than at site A. We screened 992 individuals for variation in 426 base pairs of the cytochrome oxidase c subunit 1 gene with the single-strand conformation polymorphism method. The algal deposits at site A were indeed more rapidly colonized and reached fivefold higher densities of nematodes than those in site B. Haplotype composition in site A was very similar to that of the source population, while rare haplotypes were abundant and genetic diversity was lower in site B. We conclude that founder effects and genetic bottlenecks structured the populations in site B. The genetic differences between patches in each site further indicate that effective migration in P. marina is low and that priority effects influence the genetic structure of P. marina populations